All functions |
|
---|---|
Baranov Catch Equation |
|
Catch-at-age |
|
Compute Total Stock Biomass |
|
Compute Catch by Fishing Fleet |
|
Compute Spawning Stock Biomass |
|
Compute Total Catch |
|
Compute Total Fishing Mortality |
|
Generate log-recruitment from two defined regimes of a specified length |
|
Discarded Fishing Mortality Rate |
|
Extend demographic parameter matrices to more years |
|
Find F given a desired level of catch |
|
Find F given a desired level of catch |
|
instantaneous rate to harvest rate |
|
Generate a filled parameter matrix |
|
Obtain model dimensions from parameter matrix |
|
Set variable names as names of list |
|
harvest rate to instantaneous |
|
Plot demographic parameters |
|
Plot Maturity-at-Age |
|
Plot Mortality |
|
Plot Selectivity-at-Age and Retention-at-Age |
|
Plot Weight-at-Age |
|
Project population forward by 1 year |
|
Project Population Forward Multiple Years |
|
Resample from historical recruitment timeseries |
|
Retained Fishing Mortality Rate |
|
Sablefish assessment |
|
Demographic parameter matrices for Alaska Sablefish |
|
Set Default Values for Model Options |
|
Setup model parameters |
|
OM Components for a Simple Simulation |
|
Simulate survey age composition data |
|
Simulate catch-at-age composition data |
|
Simulate catches in one region during on year |
|
Simulate observations from a lognormal distribution #' A wrapper function around `rlnorm` that generates a single random observation from a lognormal distribution centered on a predicted value (`pred`) and given a level of error (`cv`). |
|
Simulate observations from a multinomial distribution #' A wrapper function around `rmultinom` that generates a single vector of observations from a multinomial distribution where each of the `K` multinomial classes has probability `pred`. This function will automatically handle generating multinomial draws across multiple sexes. Aging error can be optionally applied. |
|
Simulate Observations from Fisheries and Surveys |
|
Project an Age Structure Population Forward by 1 year #' Description |
|
Simulate Relative Population Numbers Index |
|
Simulate Relative Population Weight Index |
|
Spatial Sablefish Assessment |
|
Subset demographic parameter matrices by first dimensions |
|
Subset matrix of undetermined dimensions |
|
Validate Demographic Parameter Matrices |