Function reference • groundfishr

setup
`setup()`	Setup folder structure
`accepted_model()`	copy the previous SSC accepted model as the new "base" model
query functions
`q_date()`	date of data query
`q_fish_age_comp()`	fishery age comp data query
`q_fish_catch()`	fishery catch data query
`q_fish_length_comp()`	fishery length comp data query
`q_fish_obs()`	fishery observer data query
`q_lls_biomass()`	longline survey biomass data query
`q_lls_length_comp()`	Longline survey length comp data query
`q_ts_age_comp()`	trawl survey age comp data query
`q_ts_biomass()`	trawl survey biomass data query
`q_ts_length_comp()`	trawl survey length comp data query
`q_ts_saa()`	Trawl survey size at age data query
`goa_dusk()`	raw data query for GOA dusky rockfish
`goa_nork()`	raw data query for GOA RE/BS
`goa_rebs()`	raw data query for GOA RE/BS rockfish
`sablefish()`	raw data query for sablefish in the GOA and BSAI
core functions
`clean_catch()`	clean up catch data
`ts_biomass()`	survey biomass
`lls_rpw()`	longline survey relative population weight
`fish_age_comp()`	fishery age composition analysis
`ts_age_comp()`	trawl survey age comp analysis
`fish_length_comp()`	fishery length composition analysis
`ts_length_comp()`	trawl survey length composition analysis
`lls_length_comp()`	Longline length composition analysis
`age_error()`	aging error analysis
`size_at_age()`	size at age analysis
figure functions
table functions
`best_f()`	best F
historical data
`sabl_catch_1960_1990`	Sablefish historical catch data
`sabl_japan_coop_lls`	Sablefish historical CPUE
`sabl_old_wts_sex`	Sablefish fixed weights at length
helper functions
`collapse_row()`	helper function for creating dat file
`purrit()`	helper function for comp data

Reference

setup

query functions

core functions

figure functions

table functions

historical data

helper functions